nextCov Sample Summary

KAUST@nextCov

1 Before Trimming FASTQC

2 After Trimming FASTQC

3 Alignment Stats

rmarkdown::render(input  = '/home/subudhak/Documents/COVID_Project/nextCov/modules/nextCovreport.Rmd', params = list(beforefq = "~/Documents/COVID_Project/shortread/dataset1_sabir_Aug/results/01_rawfastqc", samtools= '/home/subudhak/Documents/COVID_Project/shortread/dataset1_sabir_Aug/results/withoutivar/05_markduplicates'))